Looking for a delicious and healthy way to start your day? Look no further than these tasty Flaxseed Muffins, which are packed with nutritious flaxseed, hearty oats and juicy blueberries. Not only do these muffins taste amazing, they're also a great source of fiber, omega-3 fatty acids, and antioxidants. So, grab your mixing bowl and let's get baking!

Get ready to fall in love with breakfast all over again! These flaxseed muffins are the perfect way to start your day on a healthy and delicious note. Bursting with juicy blueberries and the wholesome goodness of flaxseed and oats, these muffins are packed with nutrition and flavor.
Whether you're looking for a quick breakfast on-the-go or a tasty snack, these flaxseed muffins are sure to become a new favorite in your recipe repertoire.
These flax muffins are packed with wholesome ingredients and are a great way to add flaxseed to your diet while also satisfying your sweet tooth. The combination of complex carbohydrates, fiber, protein, and healthy fats in these flaxseed muffins will fill you up and keep you energized throughout the day.
And the best part? They're really easy to make and can be enjoyed fresh out of the oven or as a grab-and-go breakfast on busy weekdays. They're also a great healthy snack to for kids to pack in their lunchboxes.
So, get ready to treat yourself to a dish that's as tasty as it is good for you! Looking for more nutrient-packed muffin ideas? Try my tasty lemon chia seed muffins or blueberry French toast muffins.
Jump to:
Why You'll Love This Dish
- Nutritious- these flaxseed muffins are packed with healthy ingredients that will leave you feeling satisfied and energized
- Quick and easy- a simple batter made in a bowl, no mixer needed
- Make-ahead- make a batch on the weekend and enjoy them all week long for breakfast or snack
- Portable- the perfect breakfast or snack to take on the go
- Kid-friendly- the whole family will love these healthy muffins that are bursting with sweet blueberries
Flaxseed Benefits
Flaxseed is a versatile ingredient that can be used in a variety of ways in the kitchen. It makes a great addition to smoothies and baked goods like my banana flaxseed bread and wild blueberry breakfast cookies. You can also sprinkle it on yogurt bowls or oatmeal for a quick boost of omega 3s and fiber.
Flaxseed can also be used as an egg replacer in vegan baking recipes like my banana chocolate chip muffins. With its mild nutty flavor and numerous health benefits, flaxseed is a valuable ingredient to have in any healthy kitchen.
Flaxseed is a tiny seed that packs a powerful nutritional punch! Flaxseeds have been linked to many health benefits, such as improved digestion and a reduced risk of heart disease, type 2 diabetes, and certain types of cancer. To learn more, read my post Ingredient 911: Flaxseed.
Doctor's Tips
Flaxseed is:
- An excellent source of fiber. Fiber is important for supporting digestive health, promoting satiety, regulating blood sugar, and reducing the risk of certain chronic diseases.
- One of the best plant-based sources of omega-3 fatty acids, which are important for heart health and reducing inflammation in the body.
- High in antioxidants. Flaxseeds are a rich source of lignans, which are plant compounds that act as antioxidants in the body. Antioxidants help to protect the body against cellular damage caused by free radicals.
- Source of protein, which is essential for building and repairing muscles and tissues in the body.
Ground vs Whole Flaxseed
You can purchase flaxseed at most grocery stores. You can buy it whole or ground (also called flaxseed meal). It comes in golden or brown varieties but there's no nutritional difference between the two.
As for the great debate, whether or not to grind your flaxseeds, I recommend grinding them for recipes. Whole flaxseeds have a tough exterior, which makes them difficult to digest. Therefore, they tend to pass through the body without giving you much nutritional benefit.
Our bodies absorb the ground form much better. Therefore, ground flaxseed provides more health benefits.
Pre-ground flaxseed however, has a short shelf life. So the best idea is to buy it whole and grind it up in a coffee or spice grinder as you need it. You can store unused flaxseed in a cool, dry place or in the refrigerator.
Ingredients

Ingredient notes and substitutions:
- Flaxseed- use ground flaxseed, also known as flaxseed meal, not whole flax seeds. Read my post all about the superfood flaxseed.
- Oats- oats add texture and a boost of whole grains. I like to use quick-cooking rolled oats in this recipe. Quick-cooking oats are the same as old-fashioned or rolled oats, but they are coarsely chopped so that they cook faster. If you only have old-fashioned oats, you can give them a quick whir in the food processor to make quick-cooking oats. You can use old-fashioned oats in this recipe but the muffins will have a chewier texture.
- Flour- I like to use a 50:50 mixture of all purpose flour and white whole wheat flour- the white whole wheat flour adds some nutritious whole grains to the recipe. Read my post on everything you need to know about whole grains.
- Greek yogurt- I use vanilla flavored Greek yogurt in this recipe; it keeps the muffins moist and adds a boost of protein. Read my post all about Greek yogurt nutrition.
- Sweetener- I use coconut sugar or light brown sugar to sweeten these muffins
- Oil- use a neutral tasting oil like safflower, canola or vegetable oil; I would not recommend olive oil in this recipe
- Blueberries- blueberries add natural sweetness that I love in this recipe- you can use fresh or frozen blueberries
Although I use blueberries in these flaxseed muffins, you can substitute other fruit like diced apples, strawberries peaches or dried cranberries. You can also use chopped nuts or chocolate chips.
How To Make Flaxseed Muffins Step-By-Step

See recipe card below for full recipe instructions.
- Step 1- Mix the dry ingredients (flour, oats, flaxseed, sugar, baking soda, baking powder, cinnamon and salt) together in a large bowl.
- Step 2- Mix the wet ingredients (egg, yogurt, milk and oil) together in a separate bowl.
- Step 3- Add the wet ingredients to the dry ingredients and stir until just combined (do not over mix). Gently stir the blueberries into the batter.
- Step 4- Scoop muffin batter into a lined muffin tin. I like to use a cookie scoop to do this. Sprinkle a few extra blueberries on top of each muffin, if desired. Bake at 375°F for 18-20 minutes until golden brown. Cool on a wire rack and serve.

Chef's Tips
- As with most baking recipes, for best results, you should use room temperature ingredients (like eggs and milk), rather than cold ingredients.
- I like to use blueberries in these flaxseed muffins but you can use this basic recipe as a guideline and add your own favorite ingredients. You can substitute other fruit like diced apples, strawberries, peaches or dried cranberries. You can also use chopped nuts or chocolate chips.
- I like to make mini muffins in a mini muffin pan and pack them in my kids lunchboxes. If making mini flaxseed muffins, the only difference is that the cook time will be shorter, closer to 12 minutes.
- You can store these flaxseed muffins in an airtight container or plastic wrap in the refrigerator up 3 days. You can also freeze these muffins in a freezer bag for up to 6 months. Defrost them in the microwave.
Recipe FAQS
Yes! These muffins are packed with nutritient-dense ingredients like whole grains, flaxseed, Greek yogurt, and blueberries. These muffins provide a good amount of fiber, protein, and healthy omega-3 fatty acids and will keep you feeling full and satisfied.
You can buy whole flaxseed and grind it in a coffee or spice grinder. You can also buy pre-ground flaxseed but it has a shorter shelf life.
Yes! Flaxseed is an excellent addition to baked goods like these tasty flaxseed muffins. It adds a nutty flavor and a boost of nutrients including fiber, protein, omega-3 fatty acids, and antioxidants. Flaxseed can also be used as an egg replacer in baked dishes like muffins and cakes.

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Recipe
Flaxseed Muffins
Equipment
Ingredients
- 1 ½ cups flour (I use a 50:50 mixture of all purpose and white whole wheat flour)
- 1 ½ cups quick-cooking oats*
- ½ cup ground flaxseed
- 1 cup coconut sugar or light brown sugar
- 2 teaspoons baking soda
- ½ teaspoon baking powder
- 1 ½ teaspoons cinnamon
- ½ teaspoon kosher salt
- 1 large egg
- 1 cup nonfat vanilla Greek yogurt
- ½ cup milk, any type
- 1 ½ teaspoons vanilla extract
- โ cup safflower, vegetable, canola or other neutral-flavored oil
- 1 ½ cups blueberries (fresh or frozen)
Instructions
- Preheat oven to 375° F. Line two 12-cup muffin tins with 18 paper muffin liners.
- Mix the flours, oats, flaxseed, sugar, baking soda, baking powder, cinnamon and salt together in a large mixing bowl. Mix the egg, yogurt, milk, vanilla, and oil in a second bowl. Add the wet ingredients to the dry ingredients and stir until just combined (do not over mix). Gently stir the blueberries into the batter.
- Scoop the batter into the muffin cups, filling them about ¾ full (you should have 18 muffins). Sprinkle a few extra blueberries on top of each muffin if desired. Bake 18-20 minutes until muffins are golden brown and a toothpick inserted into the center comes out clean.
- Cool in the pan for 5-10 minutes and then turn the muffins out onto a rack and cool completely. Muffins can be served right away, refrigerated or frozen for later use.
Notes
- For best results, you should use room temperature ingredients (like eggs and milk), rather than cold ingredients.
- I like to use blueberries in these flaxseed muffins but you can use this basic recipe as a guideline and add your own favorite ingredients like diced apples, strawberries, peaches or dried cranberries. You can also use chopped nuts or chocolate chips.
- You can make mini muffins in a mini muffin pan. The cook time will be around 12 minutes.
- You can store these flaxseed muffins in an airtight container fridge up 3 days or in the freezer up to 6 months. Defrost them in the microwave as needed.
Nicky @ Kitchen Sanctuary says
Gorgeous recipe Sonali. I'm always looking for healthy quick snacks and breakfasts me and my kids and these look great. Plus I'm slightly addicted to Greek yogurt lately, so extra bonus ๐
sonaliruder says
Thanks so much Nicky! I hope you and family enjoy them if you wind up giving them a try. P.S. maybe we should start a Greek yogurt addicts support group ๐
Angie Schneider says
These muffins look sensational! Can't wait to give them a try soon!
sonaliruder says
Thanks for stopping by Angie!
Kelley @ Chef Savvy says
What a wonderful breakfast or snack. I love blueberry muffins!
sonaliruder says
Me too! Thanks for stopping by, Kelley!
Kathy @ Olives and Garlic says
Beautiful and perfect for snacking at work. Love these. Adding to my to do list for this Sunday
sonaliruder says
Thanks, Kathy! Please let me know how they turn out!
Jessica Levinson says
These look fabulous! love having healthier muffins in the freezer for those mornings we're all running late. Have to add these to my list!
sonaliruder says
Thanks, Jessica! I'm usually running out the door in the mornings so these are definitely very convenient!
Francesca Cugini says
Need these muffins in my life!
sonaliruder says
Haha, thanks Francesca!
Elizabeth @ Enjoy Every Bite says
I am a huge believer in breakfast too!! These muffins look delicious! I know my toddler would eat them nonstop if he could (so would I). Definitely pinning this for later!
sonaliruder says
Thanks, Elizabeth! I sometimes have a hard time getting my toddler to try new foods but she really likes these muffins, which is an added plus!
Marissa | Pinch and Swirl says
These look wonderful, Sonali! I get into a breakfast rut and these seem like the perfect path out!
sonaliruder says
I know what you mean. These are definitely perfect for those breakfast ruts! Thanks for your comment, Marissa!
Alanna says
I would gladly rise to these muffins any day! Looks like blueberries were a big hit this weekend ๐ Love this recipe, makes me want to get into the kitchen with some muffin testing!!
sonaliruder says
Yes, you definitely can't go wrong with blueberries! Your blueberry bread looks amazing ๐
Karli @Peas of Cake says
Yum! Those look perfect. Love the use of greek yogurt. Pinning ๐
sonaliruder says
Thanks, Karli! I love adding Greek yogurt to my baked goods for a boost of protein ๐
Liz - Meal Makeover Mom says
That's my kind of recipe. I have all those ingredients in my pantry right now! Must try this ๐ Pinning NOW!!
sonaliruder says
Awesome! Thanks, Liz!
Min Kwon says
These muffins look fabulous!! The perfect grab and go bfast for those mornings when I'm just not that hungry! I've been making it a priority to 1) eat breakfast every morning 2) be more adventurous with choices as I tend to eat oatmeal and fruits all.the.time. I don't get sick of it, believe it or not, but I'd love to try others. This one is def on my list..but first your strata!
sonaliruder says
Thanks, Min! So excited that you tried my strata recipe! I've been trying to make breakfast a priority too. It's hard when you get in a rut eating the same things everyday. Your beautiful breakfast photos are a great motivation to try something different ๐
Kristina @ Love and Zest says
These look really good!! I love the convenience of a grab and go breakfast or snack!
sonaliruder says
Thanks, Kristina! These are perfect for when you're running out the door in the morning ๐
Suzy @ The Mediterranean Dish says
Great blueberry muffins. Just the right start to the day! Glad I found your blog. A side question, how is it that you can keep up with everything that you do? Pray share your secret ๐
sonaliruder says
Thanks for stopping by, Suzy! I'll be honest, it's not easy to juggle everything but it helps that I love what I do. I also have an amazing husband who helps me with everything ๐
Erin says
This looks delicious, Sonali! Breakfast is my favorite meal of the day and for some reason I have been craving baked goods lately! Plus, I have all of these things in my pantry right now! BINGO!
sonaliruder says
Yay, that's always a plus! Thanks for stopping by, Erin!
Kelly says
These look beautiful! I love blueberry muffins - what a great way to start the day!
sonaliruder says
I love them too ๐ Thanks for your comment, Kelly!
Rachael Hartley says
Oh man, didn't have a chance to run to the grocery store yesterday and now I'm stuck at the house without anything for breakfast staring at these delicious looking muffins! I think they were enough motivation to get me out in the cold to get breakfast!
sonaliruder says
Haha, sorry about that! ๐ Make sure you bundle up!
athletic avocado says
these look awesome! I love blueberry muffins and these look perfect! ๐
sonaliruder says
Thanks so much!
Lynn | The Road to Honey says
These are a great alternative to my usual oatmeal or yogurt parfaits and will be making it into my breakfast rotation. I also love that these are made healthier with Greek Yogurt.
http://www.theroadtohoney.com
sonaliruder says
Thanks for stopping by, Lynn! I'm always looking for new ways to incorporate oatmeal into my diet and these muffins definitely fit the bill.
Farrah says
I loveeee how pretty these are! I think I may have made something very-vaguely similar a couple years ago (in that there were blueberries, they were muffins, and they'd been healthified, haha), and these look amazing! <3On a sidenote, I was back in Lewisburg hanging out with my friend this weekend and after dinner yesterday, I was showing her awesome food pictures from my blogging friends on instagram. <3 She loves pretty much everything you posted on there, so we have lots of recipe-experimentation planned for July when I'm back here for my study hibernation! :D!
sonaliruder says
Thanks, Farrah! That's awesome about your friend. Wish I could join you guys for your recipe experimentation ๐